The England captain, who won the first major title of his career with the Bundesliga trophy this season, did find the target in the 86th minute, slotting in from close range for his 26th league goal of the season.
Musiala was replaced as he clutched his hamstring against Augsburg on Friday and was substituted early in the second half of the match, which Bayern won 3-1.
In Lisbon, Benfica drew 3-3 at home with Monaco to win their play-off tie 4-3 on aggregate and go through to play either Barcelona or Liverpool next.
The England captain, who won the first major title of his career with the Bundesliga trophy this season, did find the target in the 86th minute, slotting in from close range for his 26th league goal of the season.
Musiala was replaced as he clutched his hamstring against Augsburg on Friday and was substituted early in the second half of the match, which Bayern won 3-1.
In Lisbon, Benfica drew 3-3 at home with Monaco to win their play-off tie 4-3 on aggregate and go through to play either Barcelona or Liverpool next.
